J. Anim Sci.
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J. Anim Sci. 2009. 87:459-468. doi:10.2527/jas.2008-1127
© 2009 American Society of Animal Science

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ANIMAL GENETICS

Single- and joint-population analyses of two experimental pig crosses to confirm quantitative trait loci on Sus scrofa chromosome 6 and leptin receptor effects on fatness and growth traits1

G. Muñoz*,2, C. Ovilo*, L. Silió*, A. Tomás{dagger}, J. L. Noguera{ddagger} and M. C. Rodríguez*

* Departamento de Mejora Genética Animal, Subdirección General de Investigación y Tecnología-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, 28040 Madrid, Spain; and {dagger} Departament de Ciència Animal i dels Aliments, Universidad Autónoma de Barcelona, 08193 Bellaterra, Spain; and {ddagger} Àrea de Genètica i Millora Animal, Centre Institut de Recerca i Tecnologia Agroalimentàries-Lleida, 25198 Lleida, Spain

2 Corresponding author: munoz.gloria{at}inia.es

The primary goal of this study was to detect and confirm QTL on SSC6 for growth and fatness traits in 2 experimental F2 intercrosses: Iberian x Landrace (IB x LR) and Iberian x Meishan (IB x MS), which were used in this study for the first time in a QTL analysis related to productive traits. For this purpose, single- and joint-population analyses with single and bivariate trait models of both populations were performed. The presence of the SSC6 QTL for backfat thickness previously identified in the IB x LR cross was detected in this population with additional molecular information, but also was confirmed in the IB x MS cross. In addition, a QTL affecting BW was detected in both crosses in a similar position to the QTL detected for backfat thickness. This is the first study in which a QTL affecting BW is detected on SSC6 in the IB x LR cross, as well as in the IB x MS resource population. Furthermore, we analyzed a previously described nonsynonymous leptin receptor (LEPR) SNP located in exon 14 (c.2002C > T) for causality with respect to this QTL within both F2 populations. Our results supported the previously reported association between LEPR alleles and backfat thickness in the IB x LR cross, and this association was also confirmed within the IB x MS cross. An association not reported before between LEPR alleles and BW was identified in both populations.

Key Words: backfat thickness • body weight • joint analysis • leptin receptor • pig • polymorphism







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